84 lines
2.6 KiB
TOML
84 lines
2.6 KiB
TOML
[package]
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name = "rvdna"
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version = "0.3.0"
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edition = "2021"
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description = "rvDNA — AI-native genomic analysis. 20-SNP biomarker risk scoring, streaming anomaly detection, 64-dim profile vectors, 23andMe genotyping, CYP2D6/CYP2C19 pharmacogenomics, variant calling, protein prediction, and HNSW vector search in pure Rust."
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license = "MIT"
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repository = "https://github.com/ruvnet/ruvector"
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homepage = "https://github.com/ruvnet/ruvector/tree/main/examples/dna"
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documentation = "https://docs.rs/rvdna"
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readme = "README.md"
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keywords = ["genomics", "bioinformatics", "dna", "pharmacogenomics", "23andme"]
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categories = ["science", "algorithms", "wasm"]
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[dependencies]
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# RuVector core for HNSW vector storage
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ruvector-core = { version = "2.0.2", path = "../../crates/ruvector-core" }
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# Attention for sequence analysis
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ruvector-attention = { version = "2.0", path = "../../crates/ruvector-attention" }
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# GNN for protein structure and interaction networks
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ruvector-gnn = { version = "2.0.2", path = "../../crates/ruvector-gnn" }
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# Graph operations for biological networks
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ruvector-graph = { version = "2.0.2", path = "../../crates/ruvector-graph" }
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# DAG pipeline orchestration
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ruvector-dag = { version = "2.0", path = "../../crates/ruvector-dag" }
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# Math primitives
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ruvector-math = { version = "2.0.2", path = "../../crates/ruvector-math" }
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# Filter expressions for metadata queries
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ruvector-filter = { version = "2.0.2", path = "../../crates/ruvector-filter" }
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# Collections
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ruvector-collections = { version = "2.0.2", path = "../../crates/ruvector-collections" }
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# Serialization
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serde = { version = "1.0", features = ["derive"] }
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serde_json = "1.0"
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bincode = { version = "2.0.0-rc.3", features = ["serde"] }
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# Math and numerics
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ndarray = { version = "0.16", features = ["serde"] }
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rand = "0.8"
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rand_distr = "0.4"
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# Async runtime
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tokio = { version = "1.41", features = ["rt-multi-thread", "macros", "time"] }
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# Sublinear solver for k-mer graph PageRank
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ruvector-solver = { version = "2.0.3", path = "../../crates/ruvector-solver", default-features = false, features = ["forward-push", "neumann", "cg"] }
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# Error handling
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thiserror = "2.0"
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anyhow = "1.0"
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# Utilities
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uuid = { version = "1.11", features = ["v4"] }
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chrono = "0.4"
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tracing = "0.1"
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tracing-subscriber = { version = "0.3", features = ["env-filter"] }
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[[bin]]
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name = "rvdna-cli"
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path = "src/main.rs"
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[dev-dependencies]
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criterion = { version = "0.5", features = ["html_reports"] }
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tempfile = "3.8"
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[[bench]]
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name = "dna_bench"
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harness = false
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[[bench]]
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name = "solver_bench"
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harness = false
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[[bench]]
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name = "biomarker_bench"
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harness = false
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